installation
============

The easiest way to install scab is to use pip:

.. code-block:: console

    $ pip install scab

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If you don't have pip, the Anaconda_ Python distribution contains pip along 
with a ton of useful scientific Python packages and is a great way to get 
started with Python.  

Stable_ and development_ versions of scab can also be downloaded from Github. 
You can manually install the latest development version of scab with:

.. code-block:: console

    $ git clone https://github.com/briney/scab
    $ cd scab/
    $ git checkout development
    $ python setup.py install

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Requirements
------------

* Python 3.8+
* abutils_
* abstar_
* anndata
* dnachisel
* fastcluster
* harmonypy
* leidenalg
* matplotlib
* mnemonic
* natsort
* numpy
* pandas
* prettytable
* pytest
* python-Levenshtein
* scanpy
* scanorama
* scipy
* scrublet
* scvelo
* seaborn
* umap-learn



.. _Anaconda: https://www.continuum.io/downloads
.. _stable: https://github.com/briney/scab/releases
.. _development: https://github.com/briney/scab
.. _abutils: https://github.com/briney/abutils
.. _abstar: https://github.com/briney/abstar