installation#

The easiest way to install scab is to use pip:

$ pip install scab

If you don’t have pip, the Anaconda Python distribution contains pip along with a ton of useful scientific Python packages and is a great way to get started with Python.

Stable and development versions of scab can also be downloaded from Github. You can manually install the latest development version of scab with:

$ git clone https://github.com/briney/scab
$ cd scab/
$ git checkout development
$ python setup.py install

Requirements#

  • Python 3.8+

  • abutils

  • abstar

  • anndata

  • dnachisel

  • fastcluster

  • harmonypy

  • leidenalg

  • matplotlib

  • mnemonic

  • natsort

  • numpy

  • pandas

  • prettytable

  • pytest

  • python-Levenshtein

  • scanpy

  • scanorama

  • scipy

  • scrublet

  • scvelo

  • seaborn

  • umap-learn